No need to swap doors (or door guts) at all.
Here, I will include some vintage pics of my prior 1986 GT w/ T-tops (mind you there were no digital cameras when these pics were taken). These pics are from roughly 1991 - the complete interior was converted over to that of a 1990 GT (unfortunately the nearly new 90 GT was turned into donor vehicle w/ very low miles due to an accident). I don't have any other interior pics, but, you can see the changes.
Mind you, I did this "conversion" when it was basically unheard of at that time... No one was interested in doing such "swaps", because the 87-93's were fairly new and the 79-86's were still quite "young" as well. I guess I was a Pioneer of sorts... LOL!!
From what I remember -
The 87-93 door panels will mount directly to the 86 GT T-top doors (all pushpins on back of panels go into same holes on door, nothing changed). The (2) main bolts of the armrest of the newer (87-93) door panel should also bolt right up to the existing 86 door, as well as the single screw found at the top of the armrest. The interior mirror mounts are the same and you can use the 87-93 mirror mounts if you wish.
Obviously - if you plan on using the newer 87-93 door panel, it does have the speaker revision, while the 79-86 Mustangs never had speakers in the doors. You can certainly cut out the needed speaker hole. With that in mind, yes, you will also have to run separate speaker wires to the new speaker locations within the doors, as they did not exist previously. I cut the correct sized speaker holes, ran proper wiring and mounted aftermarket speakers in the 86's doors.
When I did my conversion, my 86 GT had pwr window/lock features, so I wanted my 90 GT door panels to retain the same functions as well - and work and look like factory. Again, if I remember correctly, the wiring colors for the switch harnesses between the 86 and 90 were almost identical, so swapping the connectors from the 86 GT door wiring over to accept the 90 GT door switch panels, was a small task with cutting/splicing, but, everything went smoothly (and everything worked 100%).
Remember, when I did this, I was exploring completely new grounds!! NO ONE back then attempted such a swap, nor was there ANY such related tech out in ANY Mustang magazines - and the internet back in 1991 - well, it was pretty much non-existent.
There are many ways you can get the 87-93 door switches to work in a 79-86, you can cut/splice wires, or merge harnesses, etc. Each person seems to do it a little different.
My swap contained the entire 90 GT interior (pwr leather front seats, rear leather seats, door panels, rear cargo shade, A-pillar plastics, top metal trim for windshield, rear metal trim at top of hatch, pwr lighted sunvisors, kick panels, all rear interior plastics except for center console & dash). I also incorporated the 87-93 rear 1/4 glass as well - again, another 1st w/ absolutely no tech available for such a swap - nor did anyone even know if such a swap was direct back then. I wired up the front seats so the pwr lumbar and pwr seat track would work too. I also used the 90 GT's pwr lighted sunvisors - which did not exist in any 86 GT, so I had to be creative and tap into the 86 GT's headliner map light (and they too worked 100% just as if when then were in the 90 GT).
When I did the swap, I wanted to retain the original 86 GT dash & center console. At the time, I used genuine Ford interior dye and dyed the bottom half of the dash to match the 1990 lighter gray of the interior panels, and the upper part of the dash (dash pad) was dyed the darker 1990 ebony color to match the tops of the doors and A-pillar plastics (just like the 87-93 interior cues). The center console was dyed the same lighter gray to match the rest of the interior.
One more note to mention - the donor parts all came from a standard 1990 GT - to make the rear interior 1/4 plastics work AND the front A-pillar plastics, I had to modify the tops of those parts @ the A and B-pillar so that the original 1986 GT T-top caps would fit correctly over the newer interior pieces.
I can't tell you how many compliments and "double takes" that car got when I had it out and about daily or taking it to any local events. The changes, although subtle enough, was something very "new" at that point in time. Nowadays, to swap 87-93 parts onto an early 79-86 Fox is commonplace AND there's so much available tech/info online to do such swaps now, compared to
21 years ago.
Enjoy!
Here's the pics:
(oh yea... those Pony rims - were BRAND NEW
back then... and cost me $1k just for the rims... LMAO. They were not easy to come by at the time, but today are found anywhere for cheap.)