I spent hours and hours and hours researching what parts to use. The info is spread out all over the net. It's not really all in one place.
Here's the thread where I posted about my swap, started out asking questions for first page or so and then started posting about my progress. It's a worthwhile swap. I also have a 13' Boss 302 and it's what completely sold me on the Coyote.
http://forums.corral.net/forums/general-mustang-tech/1547425-fox-body-coyote-swap-questions.html
I've never posted this, but I kept track of a majority of the parts and part #'s that I used. This would have saved me A LOT of time when I started. Here you go:
Coyote parts list
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Coyote Aluminator S/C crate engine M-6007-A50SC
ECU - M6017A504V
Alternator - M-8600-M50BALT
PS bracket - M-8511-M50BR
K Member Team Z (mod swap)
Headers BBK 16340
BBK H pipe 1787
Bell housing QuickTime RM-8080
PA 1799 starter
MM manual brake kit MMBAK-10
Billet pro Coyote fuel rails
Auburn customs pedal bracket
4.6 Motor mounts Prothane 6-504-BL
Power steering pulley 4R3Z-3A733-BB
Dorman M390217 94/95 Cobra 15/16" master cylinder
T56 Magnum M-7003-M6295
Clutch cable MMCL-11
Master cylinder adapter lines MMBAK-8.1
McLeod RXT 6932-07 twin disc clutch
McLeod 463458 lightened steel flywheel
Mcleod 16100 throw out bearing
M-7515-A Ford clutch fork
ARP 156-2801 flywheel bolts
T56 trans mount 6-1608BL
Maximum Motorsports 1/2" k member spacers MMKM-21
Non-offset rack bushings Prothane 6-703-BL
Whitby motor cars 3/8" motor mount spacers
Lakewood 15303 pivot ball