you only need to do 1 and 2 if you are changing out from the AOD ecu to the 5-spd ECU.
Both AOD and 5-spd cars use the same VSS and such, so this should be an easy swap. 86-88 cars use the VSS only for cruise control. Mass air cars do have an ECU connection to the VSS so the wires need to be added to pin 3 and 6 when you do a MA conversion
For step 5, the wire should be present with a jumper on it clipped to the metal support bracket near the gas pedal. Just remove the jumper and plug into the cruise disconnect plug on the pedal assemble. I recommend making sure all the cruise components are present and properly installed before installing the pedal assembly.
For 6, the o2 sensor harness jumper is a 1988+ thing. It's not present on 1987 and from what I can see also not present on 1986.
Unknown for #7 regarding the A9P. It might hang, it might not. I found it did with the A9L until i hooked up the NGS on the T5 and the only really mine wasn't hooked up was because I missed up and forgot to install the little pin under the detent ball. I wasn' dropping the trans to install that without a better reason, so I lived with it. It did it infrequently enough that it didn't bother me. Adding the pin cured it completely.
I would simplify things a lot here. Disregard the MA swap for now.
You can keep your current ECU and just hook up the clutch starter interrupt switch and the clutch NGS, and hook up the reverse light and VSS (if equipped). That will get you a running and driving 5-spd car. This will get you up and running with minimal hassle. Might you get a hanging idle from time to time? Maybe. I did.
Now, to do it factory OE correct, you'll want to track down a 5-spd 1986 speed density manual ecu. Unknown if 87 and 88 can be used. 1986 won't have the O2 sensor harness jumper. From what i see in the EVTM, it's similar to 1987 is that there is no difference in how the autos and manuals are wired for pin 30. Swap that in, install the correct trans harness that has the provision for the NGS (or run 2 wires) and that's really all that's needed.
Later on, if you want to mass air swap. Use an A9L or other 5-spd ECU, repin for the MA, and add 2 wire for the VSS (pin 3 and 6 i believe) and the single wire for the fuel pump monitor.